miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|198313005|gb|FL982310.1|FL982310 GAGACATGGATGCCTCAAGGTGAAAAGCTGCAACAATTAGAGGAACAGAAGGGAATAGTTATCCGCTTCACTATTGGGCA
CAGTGCTACATCCAATAGTATACTGGACAAGGCTATAGACTCAGAGGATGCCCAACACCATGACTTTCTTAGACTGGACC
ATGTTGAGGGATATTATGAACTATCAGCTAAGACAAAAATTTTCTTCTCAACCGCTGTCGACATCTGGGATGCTGACTTC
TATGTCAAGGTCGATGATGACGTGCATGTGAACTTAGGAATGCTTGCCACTACCCTTGCTCGGCATAAATCAAAACCAAG
AACATATATTGGCTGCATGAAGTCAGGCCCAGTTCTTGCTGACAAGAATGTGAAGTATCATGAACCTGAGTACTGGAAAT
TTGGGGAGGAAGGAAATAAATACTTCCGCCATGCTACGGGGCAGATATACGCCATCTCGAAAGATCTTGCGACTTATATT
TCAATCAATCAGCCTATCTTGCACAAATATGCAAATGAAGACGTATCACTTGGATCGTGGTTCATTGGTTTGGAAGTTAA
TCACATTGATGAAAGGAACATGTGCTGCGGAACTCCACCTGATTGTGAGTGGAAAGGGCAAGCTGGCAATATCTGTGTAG
CGTCTTTCGATTGGAGCTGCAGTGGCATATGCAAGTCTGTCGAGAGGATCAAGGATGTACATGCTCGCTGCGG




Most similar to sp|Q6NQB7|B3GT7_ARATH

>>sp|P15192|CB22_PINSY Chlorophyll a-b binding protein type 2 member
           2 (Fragment) OS=Pinus sylvestris PE=2 SV=1
          Length = 150

 Score =  105 bits (261), Expect(2) = 4e-30
 Identities = 48/54 (88%), Positives = 52/54 (96%)
 Frame = +3

Query: 135 ELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLKG 296
           ELL +NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G
Sbjct: 1   ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG 54



 Score = 47.0 bits (110), Expect(2) = 4e-30
 Identities = 28/53 (52%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
 Frame = +1

Query: 301 VEGYRVAGGPLGEIVDPL*PGGSFDPWALPTT*XF-AELK*RRXRTG-ARMFS 453
           +EGYRV GGPLGE +DPL PG +FDP  L       AELK +  + G   MFS
Sbjct: 56  IEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFS 108


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q6NQB7|B3GT7_ARATH Beta-1,3-galactosyltransferase 7
           OS=Arabidopsis thaliana GN=B3GALT7 PE=2 SV=1
          Length = 393

 Score =  409 bits (1051), Expect = e-113
 Identities = 193/243 (79%), Positives = 209/243 (86%), Gaps = 6/243 (2%)
 Frame = +1

Query: 1   ETWMPXXXXXXXXXXXXXIVIRFTIGHSATSNSILDKAIDSEDAQHHDFLRLDHVEGYYE 180
           ETWMP             IVI+F IGHSATSNSILD+AIDSEDAQH DFLRL+HVEGY+E
Sbjct: 139 ETWMPQGEKLERLEQEKGIVIKFMIGHSATSNSILDRAIDSEDAQHKDFLRLEHVEGYHE 198

Query: 181 LSAKTKIFFSTAVDIWDADFYVKVDDDVHVNLGMLATTLARHKSKPRTYIGCMKSGPVLA 360
           LSAKTKIFFSTAV  WDA+FY+KVDDDVHVNLGMLA+TLARH+SKPR YIGCMKSGPVLA
Sbjct: 199 LSAKTKIFFSTAVAKWDAEFYIKVDDDVHVNLGMLASTLARHRSKPRVYIGCMKSGPVLA 258

Query: 361 D------KNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISINQPILHKYANED 522
                  + VKYHEPEYWKFGE+GNKYFRHATGQIYAISKDLA YISINQPILHKYANED
Sbjct: 259 QNLLNCFRTVKYHEPEYWKFGEDGNKYFRHATGQIYAISKDLANYISINQPILHKYANED 318

Query: 523 VSLGSWFIGLEVNHIDERNMCCGTPPDCEWKGQAGNICVASFDWSCSGICKSVERIKDVH 702
           VSLGSWFIGLEV HID+RN CCGTPPDC WK +AG++CVASF+WSCSGICKSVER+K VH
Sbjct: 319 VSLGSWFIGLEVEHIDDRNFCCGTPPDCRWKAEAGDVCVASFEWSCSGICKSVERMKIVH 378

Query: 703 ARC 711
             C
Sbjct: 379 EVC 381